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Typing
Plasmid NZ_CP110906.1
Sequence
Nucleotide Information
Accession
NZ_CP110906.1
Description
Citrobacter freundii strain CF2206 plasmid pCF2206-4, complete sequence
Source
refseq
Topology
circular
Length
22675 bp
GC Content
0.48 %
Created at NCBI
Nov. 23, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Citrobacter freundii (546)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Citrobacter (544)
Species
Citrobacter_freundii (546)
Strain
Assembly
Genome Data Information
Accession
GCF_026240855.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
31693662
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
29.86N;121.56E
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.86/121.56
Address
Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China
ECOSYSTEM
Original Query
Homo sapiens,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Urinary tract infection
DOID/SYMP
Urinary tract infection
(
DOID:0080784
)
An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
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Plasmids from same Biosample
NZ_CP110905.1
NZ_CP110904.1
NZ_CP110903.1
NZ_CP110902.1
NZ_CP110901.1
NZ_CP110899.1
Similar Plasmids
based on Mash distance
NZ_CP110909.1
See Comparison
NZ_CP110893.1
See Comparison
NZ_CP110893.1
See Comparison
NZ_CP110909.1
See Comparison
NZ_CP110909.1
See Comparison
NZ_CP110893.1
See Comparison
NZ_CP110893.1
See Comparison
NZ_CP110909.1
See Comparison
NZ_CP110906.1
See Comparison
NZ_CP110893.1
See Comparison
NZ_CP110909.1
See Comparison
NZ_CP110909.1
See Comparison
NZ_CP110893.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore