Plasmid NZ_CP110531.1

Sequence

Nucleotide Information

Accession NZ_CP110531.1
Description Klebsiella pneumoniae strain WS_29-2 plasmid pRWS292.s8, complete sequence
Source refseq
Topology circular
Length 3347 bp
GC Content 0.46 %
Created at NCBI April 4, 2023



Assembly

Genome Data Information

Accession GCF_029542185.1
Assembly Coverage 440


Biosample

Curated Collection Information
Accession 31525422

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 13.53N;99.81E
Original Query Type coordinates
Coordinates (Lat/Lon) 13.53/99.81
Address Ratchaburi, Lum Din, Ratchaburi Province, 70000, Thailand

ECOSYSTEM
Original Query natural water sources close by farm or community
Classification aquatic,freshwater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGRop family plasmid primer RNA-binding proteincopy
MOB-typerColRNAI_rep_cluster_1857copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 5 of 5 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconGU949535_00001ColRNAI_rep_cluster_185790290minus97.0151001.08e-90339
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2