Plasmid NZ_CP110518.1

Sequence

Nucleotide Information

Accession	NZ_CP110518.1
Description	Klebsiella pneumoniae strain WS_29-1 plasmid pRWS291.s4, complete sequence
Source	refseq
Topology	circular
Length	112292 bp
GC Content	0.53 %
Created at NCBI	April 4, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_029542165.1
Assembly Coverage	468

Biosample

Curated Collection Information

Accession	31525373

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	13.53N;99.81E
Original Query Type	coordinates
Coordinates (Lat/Lon)	13.53/99.81
Address	Ratchaburi, Lum Din, Ratchaburi Province, 70000, Thailand

ECOSYSTEM

Original Query	natural water sources close by farm or community
Classification	aquatic,freshwater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP110518.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	ble		copy
rgi	mphA		copy
amrfinderplus	aph(3'')-Ib		copy
rgi	BRP(MBL)		copy
rgi	Mrx		copy
amrfinderplus	mph(A)		copy
amrfinderplus	tet(A)		copy
amrfinderplus	aph(6)-Id		copy
amrfinderplus	blaNDM-1		copy
amrfinderplus	sul2		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 140 entries

…

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Loading...
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Loading...
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Loading...
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

relaxase	NC_012885_00072	MOBH	50812	53778	plus	88.799	99	0	1597
relaxase	NC_012690_00071	MOBH	60339	60980	plus	98.131	100	2.24e-136	440
mate-pair-formation	NC_009140_00071	MPF_F	53781	55643	plus	100	100	0	1177
mate-pair-formation	NC_014170_00023	MPF_F	60066	60980	plus	92.131	100	0	569
mate-pair-formation	NC_012885_00083	MPF_F	60980	62293	plus	90.411	100	0	752
mate-pair-formation	NC_016974_00085	MPF_F	62293	62868	plus	99.479	100	1.07e-114	365
mate-pair-formation	NC_012885_00167	MPF_F	101056	102486	plus	97.484	100	0	931
oriT	JQ319772	MOBH	111079	111476	plus	100	100	0	736
replicon	000092__CP025470	IncC	1	1101	plus	100	100	0	2034
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 9 of 9 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

Loading...
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2