Plasmid NZ_CP110401.1

Sequence

Nucleotide Information

Accession NZ_CP110401.1
Description Shigella sonnei strain S17BD06357 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 5114 bp
GC Content 0.46 %
Created at NCBI Nov. 9, 2022



Assembly

Genome Data Information

Accession GCF_026016165.1
Assembly Coverage 60


Biosample

Curated Collection Information
Accession 28885482

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Homo sapiens,whole genome
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP151318.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP109779.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP151318.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP109779.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP151318.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP109779.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP110401.1 See Comparison
NZ_CP151318.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP109779.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP151318.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP109779.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP152302.1 See Comparison
NZ_CP140628.1 See Comparison
NZ_CP110407.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP019693.1 See Comparison
NZ_CP053758.1 See Comparison
NZ_CP023651.1 See Comparison
NZ_CP151318.1 See Comparison
NZ_CP151369.1 See Comparison
NZ_CP151388.1 See Comparison
NZ_CP045938.1 See Comparison
NZ_CP109779.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore