Plasmid NZ_CP110062.1

Sequence

Nucleotide Information

Accession NZ_CP110062.1
Description Enterococcus faecalis strain BE16 plasmid pBE16_3, complete sequence
Source refseq
Topology circular
Length 5166 bp
GC Content 0.37 %
Created at NCBI Nov. 3, 2022



Assembly

Genome Data Information

Accession GCF_025958805.1
Assembly Coverage 65


Biosample

Curated Collection Information
Accession 31342461

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Italy,Tuscany,Siena
Original Query Type name
Coordinates (Lat/Lon) 43.17/11.47
Address Italy,Tuscany,Siena

ECOSYSTEM
Original Query Homo sapiens,saliva
Classification host_associated,oral,saliva
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP110058.1 See Comparison
NZ_CP110058.1 See Comparison
LR962692.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
NZ_CP110058.1 See Comparison
LR962692.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
NZ_CP136356.1 See Comparison
NZ_CP136356.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
LR962692.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
NZ_CP136356.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
NZ_CP110058.1 See Comparison
NZ_CP136356.1 See Comparison
LR962692.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
LR962692.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
NZ_CP110058.1 See Comparison
NZ_CP136356.1 See Comparison
LR962692.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
NZ_CP110062.1 See Comparison
NZ_CP110058.1 See Comparison
NZ_CP136356.1 See Comparison
LR962683.1 See Comparison
LR962406.1 See Comparison
LR962345.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison
NZ_CP110058.1 See Comparison
LR962683.1 See Comparison
NZ_CP136356.1 See Comparison
LR962692.1 See Comparison
LR962406.1 See Comparison
LR962314.1 See Comparison
LR962295.1 See Comparison
LR962345.1 See Comparison
LR962187.1 See Comparison
LR961943.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2