Plasmid NZ_CP109923.1

Sequence

Nucleotide Information

Accession NZ_CP109923.1
Description Escherichia coli O2:K2:H1 strain C 237-04 plasmid pP7_2, complete sequence
Source refseq
Topology circular
Length 1459 bp
GC Content 0.51 %
Created at NCBI Nov. 2, 2022



Assembly

Genome Data Information

Accession GCF_025946525.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 30930595

PLASMID INFORMATION
BIOSAMPLE_pathotype EAST1

GEOGRAPHICAL INFORMATION
Original Query 55.68N;12.59E
Original Query Type coordinates
Coordinates (Lat/Lon) 55.68/12.59
Address Nyhavn, Havnegade, Gammelholm, Christianshavn, Copenhagen, Copenhagen Municipality, Capital Region of Denmark, 1251, Denmark

ECOSYSTEM
Original Query Homo sapiens,Feces,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Ulcerative Colitis
DOID/SYMP
  • Ulcerative colitis (DOID:8577 )
    • A colitis that is predominantly confined to the mucosa located_in colon and includes characteristic ulcers, or open sores.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP109923.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore