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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP109678.1
Sequence
Nucleotide Information
Accession
NZ_CP109678.1
Description
Enterobacter cloacae strain 2312040 plasmid punidentified, complete sequence
Source
refseq
Topology
circular
Length
133661 bp
GC Content
0.54 %
Created at NCBI
Nov. 22, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterobacter cloacae (550)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Enterobacter (547)
Species
Enterobacter_cloacae (550)
Strain
Biosample
Curated Collection Information
Accession
31029876
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
22.61556N;120.29751E
Original Query Type
coordinates
Coordinates (Lat/Lon)
22.62/120.30
Address
Yuan's Gernal Hospital, 162, ChengGong 1st Road, Guzhong Village, Lingya District, Asia New Bay Area, Kaohsiung, 802, Taiwan
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Sex
male
DISEASE
Original Query
bacterial sepsis,death,severe septic shock
DOID/SYMP
Septic shock
(
SYMP:0000451
)
None
Bacterial sepsis
(
DOID:0040085
)
A bacterial infectious disease has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
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Plasmids from same Biosample
NZ_CP109677.1
NZ_CP109675.1
Similar Plasmids
based on Mash distance
NZ_CP109678.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore