Plasmid NZ_CP107354.1

Sequence

Nucleotide Information

Accession NZ_CP107354.1
Description Klebsiella pneumoniae strain CRKP_35 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 119995 bp
GC Content 0.52 %
Created at NCBI Feb. 2, 2023



Assembly

Genome Data Information

Accession GCF_028220555.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 31207064

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wuhan
Original Query Type name
Coordinates (Lat/Lon) 30.59/114.30
Address China,Wuhan

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmph(A)copy
amrfinderplusblaCTX-M-3copy
amrfinderplussul2copy
amrfinderplustet(A)copy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplusarr-3copy
amrfinderplusaph(6)-Idcopy
amrfinderplusfloRcopy
amrfinderplusaadA16copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 148 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000195__NC_013728_00014IncQ15545356337plus10010001635
replicon000129__CP018340IncFII5996660200minus1001001.6e-119435
repliconCP033468_00001rep_cluster_21836023561062plus82.289960715
repliconAF250878IncFIA9777598162plus96.9071000651
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2