Plasmid NZ_CP107313.1

Sequence

Nucleotide Information

Accession NZ_CP107313.1
Description Klebsiella pneumoniae strain CRKP_41 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 146891 bp
GC Content 0.54 %
Created at NCBI Feb. 2, 2023



Assembly

Genome Data Information

Accession GCF_028219935.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 31207070

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wuhan
Original Query Type name
Coordinates (Lat/Lon) 30.59/114.30
Address China,Wuhan

ECOSYSTEM
Original Query Homo sapiens,lavage fluid
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MW478298.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP107313.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MW478298.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP099415.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_CP085890.1 See Comparison
NZ_CP029381.1 See Comparison
NZ_CP077777.1 See Comparison
NZ_CP088995.1 See Comparison
NZ_CP066256.1 See Comparison
NZ_MH643789.1 See Comparison
NZ_MH643792.1 See Comparison
NZ_CP154393.1 See Comparison
NZ_CP154420.1 See Comparison
NZ_MF168404.1 See Comparison
NZ_CP099415.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaSHV-12copy
amrfinderplusblaTEM-1copy
rgirmtBcopy
amrfinderplusrmtB1copy
amrfinderplusmerTcopy
amrfinderplusmerCcopy
amrfinderplusblaKPC-2copy
amrfinderplusblaCTX-M-65copy
PGAGfour-carbon acid sugar kinase family proteincopy
PGAGnucleotide-binding domain containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 198 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAP014804MOBP3535535824minus88.494854.93e-158564
mate-pair-formation08-5333_00200MPF_Unknown804510249minus99.45810001466
mate-pair-formationNC_009837_00049MPF_F1257115522minus90.3659901795
mate-pair-formationNC_009837_00049MPF_F1552216736minus99.259990787
mate-pair-formationNC_019094_00068MPF_F1932521172minus96.75310001157
mate-pair-formationNC_019037_00027MPF_F2198822623minus92.9251005.37e-130409
mate-pair-formationNC_017639_00100MPF_F2360524561minus98.7461000605
mate-pair-formationNC_007675_00027MPF_F2456125190minus99.048972.8999999999999996e-135425
mate-pair-formationNC_013437_00116MPF_T2557628197minus90.5039901640
mate-pair-formationNC_017639_00094MPF_F2871629228minus96.4911001.72e-97314
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 21 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2