Plasmid NZ_CP107305.1
Sequence
Nucleotide Information
| Accession | NZ_CP107305.1 |
|---|---|
| Description | Klebsiella pneumoniae strain CRKP_43 plasmid unnamed2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 54515 bp |
| GC Content | 0.53 % |
| Created at NCBI | Feb. 2, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 31207072 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Wuhan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.59/114.30 |
| Address | China,Wuhan |
ECOSYSTEM
| Original Query | Homo sapiens,sputum |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | infection |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | terminase TerL endonuclease subunit | copy | ||
| PGAG | phage protein | copy | ||
| PGAG | phage portal protein | copy | ||
| PGAG | S49 family peptidase | copy | ||
| PGAG | phage major capsid protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | head-tail connector protein | copy | ||
| PGAG | head-tail adaptor protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | HK97-gp10 family putative phage morphogenesis protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 55 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000232__CP012429 | rep_cluster_1 | 40391 | 41890 | minus | 98.667 | 100 | 0 | 2660 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |