Plasmid NZ_CP107299.1

Sequence

Nucleotide Information

Accession NZ_CP107299.1
Description Klebsiella pneumoniae strain CRKP_44 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 215446 bp
GC Content 0.54 %
Created at NCBI Feb. 2, 2023



Assembly

Genome Data Information

Accession GCF_028219495.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 31207073

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wuhan
Original Query Type name
Coordinates (Lat/Lon) 30.59/114.30
Address China,Wuhan

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-2copy
amrfinderplusblaLAP-2copy
amrfinderplusblaCTX-M-65copy
amrfinderplusblaCTX-M-65copy
amrfinderplusblaCTX-M-65copy
amrfinderplusdfrA14copy
amrfinderplusfosA3copy
amrfinderplusblaSHV-12copy
amrfinderplusblaTEM-1copy
rgirmtBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 266 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022651_00077MPF_F2957429882plus1001004.4e-63213
mate-pair-formationNC_010409_00124MPF_F3046031185plus98.761004.2e-156486
mate-pair-formationNC_014312_00116MPF_F101402101704plus1001004.22e-61207
mate-pair-formationNC_022609_00068MPF_F101727102092plus99.18993.99e-65223
mate-pair-formationNC_021198_00230MPF_I166599167414plus95.2211003.89e-176545
mate-pair-formationNC_021198_00234MPF_I172310172660plus91.4531006.29e-58198
mate-pair-formationNC_021198_00235MPF_I172699173400plus96.5811002.48e-151472
mate-pair-formationNC_021198_00236MPF_I173414174514plus95.641000639
mate-pair-formationNC_021198_00238MPF_I175868176584plus86.6111003.5300000000000004e-125397
mate-pair-formationNC_021198_00239MPF_I176597177109plus95.322972.39e-76254
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 19 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2