Plasmid NZ_CP107236.1

Sequence

Nucleotide Information

Accession NZ_CP107236.1
Description Escherichia coli strain REF1 plasmid pREF1-18-2, complete sequence
Source refseq
Topology circular
Length 93794 bp
GC Content 0.50 %
Created at NCBI April 5, 2024



Assembly

Genome Data Information

Accession GCF_036704625.1
Assembly Coverage 437


Biosample

Curated Collection Information
Accession 31158898

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Sweden,Gothenburg
Original Query Type name
Coordinates (Lat/Lon) 57.71/11.97
Address Sweden,Gothenburg

ECOSYSTEM
Original Query Urine,human
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_KU355874.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_KU355874.1 See Comparison
NC_024977.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NZ_CP082105.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_KU355874.1 See Comparison
NZ_CP082105.1 See Comparison
NC_024977.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NC_024977.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NC_024977.1 See Comparison
NZ_CP107236.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_CP082105.1 See Comparison
NZ_KU355874.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NZ_CP082105.1 See Comparison
NZ_KU355874.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NZ_CP082105.1 See Comparison
NZ_KU355874.1 See Comparison
NC_024977.1 See Comparison
NZ_CP071076.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_CP082105.1 See Comparison
NC_024977.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NZ_CP116924.1 See Comparison
NZ_EU418931.1 See Comparison
NZ_KU355874.1 See Comparison
NZ_CP071076.1 See Comparison
NC_024977.1 See Comparison
NZ_OR237793.1 See Comparison
NZ_OR237799.1 See Comparison
NZ_OR237795.1 See Comparison
NZ_CP082105.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
amrfinderplusblaCTX-M-15copy
amrfinderplusaac(3)-IIdcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGextended-spectrum class A beta-lactamase CTX-M-15copy
PGAGIS6-like element IS26 family transposasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 115 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_019097_00056MPF_I4144043701minus98.6749201444
mate-pair-formationNC_022267_00057MPF_I5307654275minus97.751000754
mate-pair-formationNC_019111_00038MPF_I5905359430minus96.032941.3000000000000002e-44161
mate-pair-formationNC_023290_00086MPF_I5948460008minus99.4291003.4400000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6001160712minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I6200762987minus1001000658
mate-pair-formationNC_022267_00069MPF_I6304363690minus99.074915.71e-143448
mate-pair-formationNZ_CM001473_00069MPF_I6369064034minus91.3791001.6699999999999998e-54189
mate-pair-formationNC_019097_00085MPF_I6990770722minus99.2651001.88e-176546
oriTHM021326MOBP3821238304minus1001004.37e-41172
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2