Plasmid NZ_CP104608.1

Sequence

Nucleotide Information

Accession	NZ_CP104608.1
Description	Klebsiella pneumoniae strain AHM8C161BI plasmid pHNAH8161B-4, complete sequence
Source	refseq
Topology	circular
Length	36052 bp
GC Content	0.55 %
Created at NCBI	June 7, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_030169265.1
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	30667241

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China
Original Query Type	name
Coordinates (Lat/Lon)	34.41/86.03
Address	China

ECOSYSTEM

Original Query	cell culture,chicken feces
Classification	cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Gallus gallus (9031)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP104608.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

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Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

rgi	AAC(6')-Ib-cr6		copy
amrfinderplus	qacEdelta1		copy
amrfinderplus	sul1		copy
amrfinderplus	aac(6')-Ib-cr5		copy
PGAG	ltrA		copy
PGAG	umuD		copy
PGAG	Y-family DNA polymerase		copy
PGAG	ParB family protein		copy
PGAG	AAA family ATPase		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 37 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000204__CP008701_00115	IncR	6659	7554	minus	99.442	100	0	1626
oriT	NZ_CP016035	MOBF	32030	32288	minus	81.273	96	7.34e-49	200
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2