Plasmid NZ_CP104457.1

Sequence

Nucleotide Information

Accession	NZ_CP104457.1
Description	Raoultella ornithinolytica strain MQB_Silv_108 plasmid pCol_Silv108.1, complete sequence
Source	refseq
Topology	circular
Length	9838 bp
GC Content	0.51 %
Created at NCBI	Sept. 23, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Raoultella ornithinolytica (54291)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Raoultella (160674)
Species	Raoultella_ornithinolytica (54291)
Strain

Assembly

Genome Data Information

Accession	GCF_025349945.1
Assembly Coverage	148

Biosample

Curated Collection Information

Accession	30696136

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Spain
Original Query Type	name
Coordinates (Lat/Lon)	39.33/-4.84
Address	Spain

ECOSYSTEM

Original Query	whole organism,wastewater
Classification	host_associated,wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP104457.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	aac(6')-Ib3		copy
amrfinderplus	blaOXA-101		copy
rgi	AAC(6')-Ib10		copy
PGAG	hypothetical protein		copy
PGAG	colicin release lysis protein		copy
PGAG	IS4-like element ISApu1 family transposase		copy
PGAG	hypothetical protein		copy
PGAG	integron integrase		copy
PGAG	OXA-10 family class D beta-lactamase OXA-101		copy
PGAG	aminoglycoside N-acetyltransferase AAC(6')-Ib3		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 15 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000020__CP023920	ColRNAI_rep_cluster_1987	1	106	plus	94.34	93	3.4799999999999997e-38	163
replicon	CP041116_00002	ColRNAI_rep_cluster_1987	9477	9838	plus	88.441	92	1.06e-119	436
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2