Plasmid NZ_CP103750.1

Sequence

Nucleotide Information

Accession NZ_CP103750.1
Description Escherichia coli strain 3090 plasmid pMB2791_5, complete sequence
Source refseq
Topology circular
Length 3172 bp
GC Content 0.47 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024917995.1
Assembly Coverage 85


Biosample

Curated Collection Information
Accession 28174017

PLASMID INFORMATION
Genotype ST167

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGmobAcopy
PGAGRop family plasmid primer RNA-binding proteincopy
MOB-typerMOB_unknowncopy
MOB-typerColRNAI_rep_cluster_1857copy
MOB-typerrep_cluster_2350copy
MOB-typerMOBFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 10 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconGU949535_00001ColRNAI_rep_cluster_1857190minus98.889992.5000000000000003e-37161
oriTCP010128MOB_unknown22172457minus99.5851003.54e-121440
repliconCP041342_00001rep_cluster_235027153172plus93.305970676
relaxaseCP019897MOBF18882208minus99.0651002.23e-62210
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2