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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP103608.1
Sequence
Nucleotide Information
Accession
NZ_CP103608.1
Description
Klebsiella pneumoniae strain 4386 plasmid pMB7231_3, complete sequence
Source
refseq
Topology
circular
Length
4773 bp
GC Content
0.42 %
Created at NCBI
Sept. 6, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_024917855.1
Assembly Coverage
215
Biosample
Curated Collection Information
Accession
28174060
PLASMID INFORMATION
Genotype
ST29
GEOGRAPHICAL INFORMATION
Original Query
29.7068N;95.3971W
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.71/-95.40
Address
University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Bacteremia
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
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Plasmids from same Biosample
NZ_CP103607.1
NZ_CP103606.1
Similar Plasmids
based on Mash distance
NZ_CP056142.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP056142.1
See Comparison
NZ_CP084821.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP103608.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP056142.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP056142.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP084821.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP084821.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP056142.1
See Comparison
NZ_CP084821.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP056142.1
See Comparison
NZ_CP084821.1
See Comparison
NZ_CP103569.1
See Comparison
NZ_CP067050.1
See Comparison
NZ_CP084821.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP103569.1
Sequence
Accession
:
NZ_CP103569.1
Description
: Klebsiella pneumoniae strain 4680 plasmid pMB8190_2, complete sequence
Source
: refseq
Created at NCBI
: Sept. 5, 2022
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
28174066
GEOGRAPHICAL INFORMATION
Original Query
: 29.7068N;95.3971W
Original Query Type
: coordinates
Address
: University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States
Coordinates
(Lat/Lon): 29.71/-95.40
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Bacteremia
DOID/SYMP
:
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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Element Name
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NUCCORE ACC
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore