Plasmid NZ_CP103572.1

Sequence

Nucleotide Information

Accession NZ_CP103572.1
Description Escherichia coli strain 3045 plasmid pMB8093_2, complete sequence
Source refseq
Topology circular
Length 94670 bp
GC Content 0.52 %
Created at NCBI Sept. 5, 2022



Assembly

Genome Data Information

Accession GCF_024917235.1
Assembly Coverage 289


Biosample

Curated Collection Information
Accession 28174015

PLASMID INFORMATION
Genotype ST44

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP103572.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGsingle-stranded DNA-binding proteincopy
PGAGDUF905 domain-containing proteincopy
PGAGParB/RepB/Spo0J family partition proteincopy
PGAGpsiBcopy
PGAGplasmid SOS inhibition protein Acopy
PGAGhypothetical proteincopy
PGAGantirestriction protein ArdAcopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 117 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconKC340959IncK2/Z7663277504plus10010001613
relaxaseNC_013728_00087MOBP1187314581plus90.50810001634
mate-pair-formationNC_011754_00087MPF_I1715419454minus99.47810001431
mate-pair-formationNC_014843_00047MPF_I3564436846minus96.2591000706
mate-pair-formationNC_007365_00035MPF_I4305343448minus94.6971001.65e-62212
mate-pair-formationNC_011754_00109MPF_I4350044027minus92.0451004.12e-87285
mate-pair-formationNC_007365_00033MPF_I4402744737minus97.891002.72e-153478
mate-pair-formationNC_022371_00084MPF_I4607247043minus91.0491001.24e-178555
mate-pair-formationNC_012487_00131MPF_I4706047749minus91.304994.3299999999999996e-138434
mate-pair-formationNC_022992_00098MPF_I4776448111minus1001009.01e-51178
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2