Plasmid NZ_CP103414.1

Sequence

Nucleotide Information

Accession NZ_CP103414.1
Description Acinetobacter baumannii strain AB2369 plasmid pAB2369-1, complete sequence
Source refseq
Topology circular
Length 11193 bp
GC Content 0.35 %
Created at NCBI Sept. 1, 2022



Assembly

Genome Data Information

Accession GCF_024800505.1
Assembly Coverage 689.66


Biosample

Curated Collection Information

Accession 30472217

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.28N;113.58E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.28/113.58
Address Haiyu Road, Xiangwan Subdistrict, Xiangzhou District, Zhuhai, Guangdong Province, 519000, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pulmonary infection
DOID/SYMP
  • Lung disease (DOID:850 )
  • A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
  • Disease infectious agent (DOID:0050117 )
  • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
CP035933.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
CP035933.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_MT849281.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP103415.1 See Comparison
CP035933.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_MT849281.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_MT849281.1 See Comparison
NZ_CP040088.1 See Comparison
NZ_CP102832.1 See Comparison
CP035933.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_MT849281.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP144241.1 See Comparison
CP035933.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_MT849281.1 See Comparison
CP035933.1 See Comparison
NZ_CP103414.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP054417.1 See Comparison
CP035933.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_MT849281.1 See Comparison
NZ_CP040086.1 See Comparison
NZ_CP040088.1 See Comparison
NZ_CP144241.1 See Comparison
NZ_CP144254.1 See Comparison
NZ_CP144256.1 See Comparison
NZ_CP102832.1 See Comparison
NZ_CP103415.1 See Comparison
NZ_CP096683.1 See Comparison
NZ_CP077831.1 See Comparison
NZ_CP077845.1 See Comparison
NZ_CP077842.1 See Comparison
NZ_CP096750.1 See Comparison
NZ_CP096741.1 See Comparison
NZ_CP096761.1 See Comparison
NZ_CP096758.1 See Comparison
NZ_CP054417.1 See Comparison
NZ_CP082890.1 See Comparison
NZ_CP091329.1 See Comparison
NZ_CP090183.1 See Comparison
NZ_CP082893.1 See Comparison
NZ_MT849281.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2