Plasmid NZ_CP102969.1

Sequence

Nucleotide Information

Accession NZ_CP102969.1
Description Staphylococcus aureus strain 13-G-52 plasmid p13-G-52
Source refseq
Topology linear
Length 6154 bp
GC Content 0.29 %
Created at NCBI Aug. 27, 2022



Assembly

Genome Data Information

Accession GCF_024741635.1
Assembly Coverage 136


Biosample

Curated Collection Information
Accession 30370429

PLASMID INFORMATION
Genotype ST7691

GEOGRAPHICAL INFORMATION
Original Query Nepal,Gokarna
Original Query Type name
Coordinates (Lat/Lon) 27.74/85.39
Address Nepal,Gokarna

ECOSYSTEM
Original Query Macaca mulatta,Oral swab,Wild animal
Classification host_associated,oral
Host-associated Taxon
  • Macaca mulatta (9544)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP062330.1 See Comparison
NZ_CP080565.1 See Comparison
NC_022227.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP133662.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP062330.1 See Comparison
NZ_CP080565.1 See Comparison
NC_022227.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP133662.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP062330.1 See Comparison
NZ_CP133662.1 See Comparison
NZ_CP080565.1 See Comparison
NC_022227.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP062330.1 See Comparison
NZ_CP080565.1 See Comparison
NC_022227.1 See Comparison
NZ_CP133662.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_CP080565.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP062330.1 See Comparison
NC_022227.1 See Comparison
NZ_CP133662.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP062330.1 See Comparison
NZ_CP102969.1 See Comparison
NZ_CP080565.1 See Comparison
NZ_CP133662.1 See Comparison
NC_022227.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP016399.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP025481.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP062330.1 See Comparison
NZ_CP080565.1 See Comparison
NC_022227.1 See Comparison
NZ_EU333812.1 See Comparison
NZ_CP062472.1 See Comparison
NZ_CP133662.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2