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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP102965.1
Sequence
Nucleotide Information
Accession
NZ_CP102965.1
Description
Staphylococcus aureus strain 40-B-50 plasmid p40-B-50B
Source
refseq
Topology
linear
Length
5529 bp
GC Content
0.29 %
Created at NCBI
Aug. 27, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Staphylococcus aureus (1280)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Bacillales (1385)
Family
Staphylococcaceae (90964)
Genus
Staphylococcus (1279)
Species
Staphylococcus_aureus (1280)
Strain
Assembly
Genome Data Information
Accession
GCF_024741575.1
Assembly Coverage
252
Biosample
Curated Collection Information
Accession
30370432
PLASMID INFORMATION
Genotype
ST7694
GEOGRAPHICAL INFORMATION
Original Query
Nepal,Bajrayogini
Original Query Type
name
Coordinates (Lat/Lon)
27.71/85.34
Address
Nepal,Bajrayogini
ECOSYSTEM
Original Query
Macaca mulatta,Oral swab,Wild animal
Classification
host_associated,oral
Host-associated Taxon
Macaca mulatta (
9544
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP102964.1
Similar Plasmids
based on Mash distance
NZ_CP053078.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP102965.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP013626.1
See Comparison
NZ_CP053078.1
See Comparison
NZ_CP013626.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2