Plasmid NZ_CP102965.1

Sequence

Nucleotide Information

Accession NZ_CP102965.1
Description Staphylococcus aureus strain 40-B-50 plasmid p40-B-50B
Source refseq
Topology linear
Length 5529 bp
GC Content 0.29 %
Created at NCBI Aug. 27, 2022



Assembly

Genome Data Information

Accession GCF_024741575.1
Assembly Coverage 252


Biosample

Curated Collection Information

Accession 30370432

PLASMID INFORMATION
Genotype ST7694

GEOGRAPHICAL INFORMATION
Original Query Nepal,Bajrayogini
Original Query Type name
Coordinates (Lat/Lon) 27.71/85.34
Address Nepal,Bajrayogini

ECOSYSTEM
Original Query Macaca mulatta,Oral swab,Wild animal
Classification host_associated,oral
Host-associated Taxon
  • Macaca mulatta (9544)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample




Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2