Plasmid NZ_CP102672.1

Sequence

Nucleotide Information

Accession NZ_CP102672.1
Description Escherichia coli strain XH987 plasmid pXH987-MCR, complete sequence
Source refseq
Topology circular
Length 62280 bp
GC Content 0.43 %
Created at NCBI Aug. 26, 2022



Assembly

Genome Data Information

Accession GCF_024735225.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 30247543

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.16N;120.12E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.16/120.12
Address 之江大桥, 西浦社区, 双浦镇, Xihu District, Hangzhou City, Zhejiang, 310053, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTI
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_MN232212.1 See Comparison
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NZ_AP027711.1 See Comparison
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NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657478.1 See Comparison
NZ_KY657476.1 See Comparison
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NZ_MN232184.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
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NZ_MZ277864.1 See Comparison
NZ_CP102678.1 See Comparison
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NZ_CP080148.1 See Comparison
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NZ_CP080136.1 See Comparison
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NZ_MG825374.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MF175188.1 See Comparison
NZ_CP047579.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_KY012274.1 See Comparison
NZ_CP016187.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP016185.1 See Comparison
NZ_KY693674.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP034109.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP104081.1 See Comparison
CP069705.1 See Comparison
NZ_CP062982.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_MK574669.1 See Comparison
NZ_MK574667.1 See Comparison
NZ_LC511662.1 See Comparison
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NZ_CP080148.1 See Comparison
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NZ_CP080136.1 See Comparison
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NZ_CP033254.2 See Comparison
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NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
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NZ_AP027675.1 See Comparison
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NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232204.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
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NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_CP058303.1 See Comparison
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NZ_MF175189.1 See Comparison
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NZ_CP055260.1 See Comparison
NZ_MH522412.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MF175188.1 See Comparison
NZ_KY693674.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_KY012274.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP016185.1 See Comparison
NZ_CP047579.1 See Comparison
NZ_CP034109.1 See Comparison
NZ_CP070924.1 See Comparison
CP069705.1 See Comparison
NZ_CP104081.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_CP062982.1 See Comparison
NZ_MK574669.1 See Comparison
NZ_MK574667.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP102678.1 See Comparison
NZ_MW373507.1 See Comparison
NZ_OM839890.1 See Comparison
CP085520.1 See Comparison
NZ_CP020548.1 See Comparison
NZ_CP080148.1 See Comparison
NZ_CP080136.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP021176.1 See Comparison
NZ_MZ062605.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_CP033254.2 See Comparison
AP027529.1 See Comparison
NZ_CP029184.1 See Comparison
NZ_CP126508.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_MN232212.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232204.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657478.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_MN689940.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MH522412.1 See Comparison
NZ_MF175189.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MF175188.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_KY693674.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_CP016187.1 See Comparison
NZ_KY012274.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP016185.1 See Comparison
NZ_CP047579.1 See Comparison
NZ_CP034109.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP062982.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
CP069705.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_MK574669.1 See Comparison
NZ_MK574667.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP104081.1 See Comparison
CP085520.1 See Comparison
NZ_CP102678.1 See Comparison
NZ_MW373507.1 See Comparison
NZ_CP080148.1 See Comparison
NZ_CP080136.1 See Comparison
NZ_CP067343.1 See Comparison
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NZ_CP021176.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP020548.1 See Comparison
AP027529.1 See Comparison
NZ_CP033254.2 See Comparison
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NZ_AP027699.1 See Comparison
NZ_CP126508.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232212.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_MN232204.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657478.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MN689940.1 See Comparison
NZ_MH522412.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MF175189.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_MF175188.1 See Comparison
NZ_KY693674.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP047579.1 See Comparison
NZ_KY012274.1 See Comparison
NZ_CP016187.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP016185.1 See Comparison
NZ_CP062982.1 See Comparison
NZ_CP034109.1 See Comparison
NZ_CP070924.1 See Comparison
CP069705.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_MK574669.1 See Comparison
NZ_MK574667.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP080148.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP104081.1 See Comparison
NZ_CP102678.1 See Comparison
NZ_MW373507.1 See Comparison
CP085520.1 See Comparison
NZ_CP080136.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_MZ062605.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP021176.1 See Comparison
NZ_CP020548.1 See Comparison
NZ_CP033254.2 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore