Plasmid NZ_CP102556.1

Sequence

Nucleotide Information

Accession NZ_CP102556.1
Description Klebsiella pneumoniae strain KPH3 plasmid p4, complete sequence
Source refseq
Topology circular
Length 9057 bp
GC Content 0.51 %
Created at NCBI Aug. 17, 2022



Assembly

Genome Data Information

Accession GCF_024666505.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 30176386

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 15.8700N;100.9925E
Original Query Type coordinates
Coordinates (Lat/Lon) 15.87/100.99
Address New Life Cafe, 193, พช.2027, Ban Khlong Takro, Ban Nong Chaeng, Ban Phot, Phetchabun Province, 42180, Thailand

ECOSYSTEM
Original Query Homo sapiens,microbial
Classification host_associated,material,organic
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
    • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP102556.1 See Comparison


Plasmid Visualization

JSON GENBANK




Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP041116_00002ColRNAI_rep_cluster_198710551529plus89.627929.83e-170603
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2