Plasmid NZ_CP101865.1

Sequence

Nucleotide Information

Accession NZ_CP101865.1
Description Escherichia coli strain LP50-1 plasmid pLP50-1-1kb, complete sequence
Source refseq
Topology circular
Length 1597 bp
GC Content 0.50 %
Created at NCBI Aug. 3, 2022



Assembly

Genome Data Information

Accession GCF_024499265.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 29932434

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.25N;119.01E
Original Query Type coordinates
Coordinates (Lat/Lon) 32.25/119.01
Address 龙袍街道, Luhe District, Nanjing City, Jiangsu, China

ECOSYSTEM
Original Query pigeon
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP079672.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPCH plasmid pCMC387MPCH_P4, complete sequence
    • Source: refseq
    • Created at NCBI: July 27, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20130675
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Sepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079161.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC08_CMC432MC plasmid pCMC432M_P6, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115186
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079154.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC07_CMC432PC plasmid pCMC432P_P4, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115184
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079143.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC05_CMC387PC plasmid pCMC387P_P5, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115179
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Sepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079149.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC06_CMC387MC plasmid pCMC387M_P4, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115183
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Sepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore