Plasmid NZ_CP101836.1

Sequence

Nucleotide Information

Accession NZ_CP101836.1
Description Klebsiella pneumoniae strain GN4549 plasmid pGN4549-1, complete sequence
Source refseq
Topology circular
Length 217547 bp
GC Content 0.52 %
Created at NCBI March 15, 2023



Assembly

Genome Data Information

Accession GCF_029201465.1
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 29935323

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 18.1096N;77.2975W
Original Query Type coordinates
Coordinates (Lat/Lon) 18.11/-77.30
Address Clarendon, Middlesex County, Jamaica

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query urine tract infections
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
  • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization





Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplustet(A)copy
amrfinderplussilCcopy
amrfinderplussilFcopy
amrfinderplussilAcopy
amrfinderplusarsBcopy
amrfinderplussilBcopy
amrfinderplussilRcopy
amrfinderplussilScopy
amrfinderplusarsRcopy
amrfinderplusarsAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 221 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T164959167268minus99.35110001452
mate-pair-formationNC_019155_00032MPF_F169841172696minus92.4379901700
mate-pair-formationNC_019165_00034MPF_F172702174054minus95.344990797
mate-pair-formationNC_021654_00016MPF_F176948178909minus98.4719801243
mate-pair-formationNC_011281_00082MPF_F178962179606minus95.3491009.95e-125395
mate-pair-formationNC_022609_00081MPF_F179885180871minus95.1521000652
mate-pair-formationNC_014312_00128MPF_F181307181939minus99.0521004.46e-126398
mate-pair-formationNC_021502_00131MPF_T182331184967minus95.10810001736
mate-pair-formationNC_019389_00068MPF_F187741188256minus94.186893.73e-104335
mate-pair-formationNC_023332_00154MPF_F188937190358minus99.5781000791
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2