PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Identical Plasmids
Visualization
Annotations
Typing
Plasmid NZ_CP101232.1
Sequence
Nucleotide Information
Accession
NZ_CP101232.1
Description
Escherichia coli strain EC21Z-144 plasmid pEC21Z144-2K-2, complete sequence
Source
refseq
Topology
circular
Length
1549 bp
GC Content
0.51 %
Created at NCBI
July 19, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_024298485.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
29593413
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China,Zhejiang
Original Query Type
name
Coordinates (Lat/Lon)
29.00/120.00
Address
China,Zhejiang
ECOSYSTEM
Original Query
Homo sapiens,cell culture
Classification
cell_culture,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP101231.1
NZ_CP101230.1
NZ_CP101229.1
NZ_CP101228.1
NZ_CP101227.1
NZ_CP101226.1
NZ_CP101225.1
NZ_CP101224.1
NZ_CP101223.1
Similar Plasmids
based on Mash distance
NZ_CP101209.1
See Comparison
NZ_CP101232.1
See Comparison
NZ_CP101209.1
See Comparison
NZ_CP101209.1
See Comparison
NZ_CP101209.1
See Comparison
NZ_CP101209.1
See Comparison
NZ_CP101209.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP101209.1
Sequence
Accession
:
NZ_CP101209.1
Description
: Escherichia coli strain EC21Z-151 plasmid pEC21Z151-2K-2, complete sequence
Source
: refseq
Created at NCBI
: July 19, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
29593415
GEOGRAPHICAL INFORMATION
Original Query
: China,Zhejiang
Original Query Type
: name
Address
: China,Zhejiang
Coordinates
(Lat/Lon): 29.00/120.00
ECOSYSTEM
Original Query
: Homo sapiens,cell culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore