Plasmid NZ_CP100721.1

Sequence

Nucleotide Information

Accession NZ_CP100721.1
Description Salmonella enterica subsp. enterica serovar Weltevreden strain R17.4942 plasmid pR17.4942_4.2k, complete sequence
Source refseq
Topology circular
Length 4245 bp
GC Content 0.53 %
Created at NCBI July 15, 2022



Assembly

Genome Data Information

Accession GCF_024266505.1
Assembly Coverage 813


Biosample

Curated Collection Information
Accession 29431223

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan,Kaohsiung City
Original Query Type name
Coordinates (Lat/Lon) 22.62/120.31
Address Taiwan,Kaohsiung City

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 0
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124445.1 See Comparison
NZ_CP124439.1 See Comparison
CP057687.1 See Comparison
NZ_CP070030.1 See Comparison
CP099105.1 See Comparison
NC_003456.1 See Comparison
CP077355.1 See Comparison
CP077254.1 See Comparison
NZ_CP016532.1 See Comparison
CP077355.1 See Comparison
CP057687.1 See Comparison
NZ_CP070030.1 See Comparison
CP077254.1 See Comparison
NZ_CP124445.1 See Comparison
NZ_CP124439.1 See Comparison
CP099105.1 See Comparison
NZ_CP100721.1 See Comparison
NZ_CP124445.1 See Comparison
NZ_CP016532.1 See Comparison
NC_003456.1 See Comparison
NZ_CP124439.1 See Comparison
NC_003456.1 See Comparison
CP077355.1 See Comparison
CP077254.1 See Comparison
NZ_CP016532.1 See Comparison
CP057687.1 See Comparison
NZ_CP070030.1 See Comparison
CP099105.1 See Comparison
CP057687.1 See Comparison
NZ_CP124445.1 See Comparison
NZ_CP124439.1 See Comparison
CP099105.1 See Comparison
NZ_CP070030.1 See Comparison
CP077254.1 See Comparison
NZ_CP016532.1 See Comparison
CP077355.1 See Comparison
NC_003456.1 See Comparison
NZ_CP124445.1 See Comparison
NZ_CP124439.1 See Comparison
NZ_CP070030.1 See Comparison
CP057687.1 See Comparison
NZ_CP070030.1 See Comparison
CP077355.1 See Comparison
NZ_CP016532.1 See Comparison
NC_003456.1 See Comparison
NZ_CP124445.1 See Comparison
NZ_CP124439.1 See Comparison
CP099105.1 See Comparison
CP077254.1 See Comparison
CP057687.1 See Comparison
CP077355.1 See Comparison
CP099105.1 See Comparison
CP077254.1 See Comparison
NZ_CP016532.1 See Comparison
NC_003456.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore