Plasmid NZ_CP100602.1

Sequence

Nucleotide Information

Accession NZ_CP100602.1
Description Klebsiella pneumoniae strain WX17388 plasmid pwx17388plas, complete sequence
Source refseq
Topology circular
Length 222562 bp
GC Content 0.50 %
Created at NCBI Nov. 2, 2022



Assembly

Genome Data Information

Accession GCF_025917765.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 29490475

PLASMID INFORMATION
Genotype K16

GEOGRAPHICAL INFORMATION
Original Query 31.57N;120.30E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.57/120.30
Address Briant, Zhongshan Road, 崇安寺街道, Liangxi District, Wuxi City, Jiangsu, 214000, China

ECOSYSTEM
Original Query Homo sapiens,Pus
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 64

DISEASE
Original Query Neck Abscess
DOID/SYMP

Visualization

PNG JSON




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore