Plasmid NZ_CP099335.1

Sequence

Nucleotide Information

Accession NZ_CP099335.1
Description Escherichia fergusonii strain RHB44-C03 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 59932 bp
GC Content 0.43 %
Created at NCBI April 15, 2023



Assembly

Genome Data Information

Accession GCF_029719985.1
Assembly Coverage 143


Biosample

Curated Collection Information
Accession 15488660

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled faeces sample collected from floor of poultry farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP099335.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGtype I toxin-antitoxin system Hok family toxincopy
PGAGProQ/FINO family proteincopy
PGAGhypothetical proteincopy
PGAGdivision plane positioning ATPase MipZcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 76 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_020270_00058MPF_T3965341608minus99.84710001232
mate-pair-formationNC_019039_00051MPF_T4383044597minus99.2191007.23e-172532
mate-pair-formationNC_019039_00052MPF_T4459745328minus99.181004.01e-147460
mate-pair-formationNC_020270_00063MPF_T4549747851minus97.45210001532
mate-pair-formationNC_019039_00065MPF_T5371454706minus1001001.3e-179558
repliconAP017614IncI2131029plus10010001879
relaxaseMF175187_00027MOBP1351617241plus10010002445
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2