Plasmid NZ_CP098728.1

Sequence

Nucleotide Information

Accession NZ_CP098728.1
Description Staphylococcus aureus strain SauR3 plasmid pSauR3-1, complete sequence
Source refseq
Topology circular
Length 42928 bp
GC Content 0.29 %
Created at NCBI June 7, 2022



Assembly

Genome Data Information

Accession GCF_020177155.3
Assembly Coverage 30


Biosample

Curated Collection Information
Accession 21591357

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 5.325464N;103.151674E
Original Query Type coordinates
Coordinates (Lat/Lon) 5.33/103.15
Address Hospital Sultanah Nur Zahirah, Jalan Sultan Mahmud, Kampung Ladang, Batu Buruk, Kuala Terengganu, Terengganu, 20000, Malaysia

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP098728.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaR1copy
amrfinderplusblaIcopy
amrfinderplusaph(3')-IIIacopy
rgimsrAcopy
amrfinderplusblaZcopy
amrfinderpluscadDcopy
rgimphCcopy
amrfinderplusmph(C)copy
rgiSAT-4copy
rgiaad(6)copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 57 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTKC964607MOBV2056820716minus1001005.980000000000001e-72276
repliconAP003089rep_cluster_21761876plus99.77210001607
replicon000261__GQ900456rep_cluster_10172077420950minus92.697941.04e-65255
repliconAP003139rep_cluster_21002108122064minus99.28910001779
repliconCP000737rep_cluster_17332236223104plus99.59710001356
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2