Plasmid NZ_CP098425.1

Sequence

Nucleotide Information

Accession NZ_CP098425.1
Description Klebsiella pneumoniae strain 220 plasmid p220_2, complete sequence
Source refseq
Topology circular
Length 10122 bp
GC Content 0.55 %
Created at NCBI Oct. 22, 2023



Assembly

Genome Data Information

Accession GCF_032878355.1
Assembly Coverage 57.78


Biosample

Curated Collection Information
Accession 28747376

PLASMID INFORMATION
Genotype ST101

GEOGRAPHICAL INFORMATION
Original Query 45.19660N;9.14881E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.20/9.15
Address Fondazione I.R.C.C.S. Policlinico San Matteo, Piazzale Camillo Golgi, Ponte di Pietra, Pavia, Lombardy, 27100, Italy

ECOSYSTEM
Original Query Homo sapiens,clinical isolate
Classification host_associated,material,organic
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Carbapenem resistant Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
    • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore