Plasmid NZ_CP098130.1
Sequence
Nucleotide Information
| Accession | NZ_CP098130.1 |
|---|---|
| Description | Klebsiella pneumoniae strain Z0117KP0033 plasmid pZ0117KP0033-3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 28775 bp |
| GC Content | 0.55 % |
| Created at NCBI | June 9, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 28703773 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | South Korea |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.56/127.94 |
| Address | South Korea |
ECOSYSTEM
| Original Query | Canis lupus familiaris,Rectal swab |
|---|---|
| Classification | gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | aac(3)-IIe | copy | ||
| amrfinderplus | aac(6')-Ib-cr5 | copy | ||
| amrfinderplus | dfrA14 | copy | ||
| amrfinderplus | blaOXA-1 | copy | ||
| rgi | catB3 | copy | ||
| rgi | AAC(6')-Ib-cr6 | copy | ||
| amrfinderplus | qnrB1 | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | AAA family ATPase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 26 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| No data available in table | |||||||||
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 0 to 0 of 0 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |