Plasmid NZ_CP096769.1

Sequence

Nucleotide Information

Accession NZ_CP096769.1
Description Acinetobacter baumannii strain 5388 plasmid p5388_1, complete sequence
Source refseq
Topology circular
Length 77533 bp
GC Content 0.34 %
Created at NCBI May 17, 2022



Assembly

Genome Data Information

Accession GCF_023362275.1
Assembly Coverage 240


Biosample

Curated Collection Information
Accession 24114644

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Beijing
Original Query Type name
Coordinates (Lat/Lon) 39.91/116.39
Address China,Beijing

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP096708.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP018144.1 See Comparison
NC_017848.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP096708.1 See Comparison
NC_017848.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP018144.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP096708.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP018144.1 See Comparison
NC_017848.1 See Comparison
NZ_CP096708.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP018144.1 See Comparison
NC_017848.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_CP096708.1 See Comparison
NC_017848.1 See Comparison
NZ_CP018144.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP082889.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP018144.1 See Comparison
NC_017848.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_CP096751.1 See Comparison
NZ_CP096695.1 See Comparison
NZ_CP096716.1 See Comparison
NZ_CP096730.1 See Comparison
NZ_CP096712.1 See Comparison
NZ_CP096736.1 See Comparison
NZ_CP096725.1 See Comparison
NZ_CP096708.1 See Comparison
NZ_CP082892.1 See Comparison
NZ_CP082225.1 See Comparison
NZ_CP082222.1 See Comparison
NZ_MT849282.1 See Comparison
NZ_CP096708.1 See Comparison
NZ_CP096769.1 See Comparison
NZ_KM922672.1 See Comparison
NZ_CP018144.1 See Comparison
NC_017848.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2