PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Annotations
Typing
Plasmid NZ_CP096221.1
Sequence
Nucleotide Information
Accession
NZ_CP096221.1
Description
Enterococcus faecium strain UCH5 plasmid pUCH5-2, complete sequence
Source
refseq
Topology
circular
Length
54822 bp
GC Content
0.36 %
Created at NCBI
May 3, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_023204975.1
Assembly Coverage
247
Biosample
Curated Collection Information
Accession
27728132
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
39.742630N;104.842026W
Original Query Type
coordinates
Coordinates (Lat/Lon)
39.74/-104.84
Address
Anschutz Inpatient Pavilion (University Hospital), 12605, East 16th Avenue, Aurora, Adams County, Colorado, 80045, United States
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Enterococcus infection
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP096226.1
NZ_CP096225.1
NZ_CP096224.1
NZ_CP096223.1
NZ_CP096222.1
NZ_CP096220.1
Similar Plasmids
based on Mash distance
NZ_CP012463.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP012463.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP012463.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP012463.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP012463.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP012463.1
See Comparison
NZ_CP012432.1
See Comparison
NZ_CP017789.1
See Comparison
NZ_CP017799.1
See Comparison
NZ_CP017794.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP066423.1
See Comparison
NZ_CP066391.1
See Comparison
NZ_CP096221.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore