Plasmid NZ_CP095444.1

Sequence

Nucleotide Information

Accession NZ_CP095444.1
Description Providencia stuartii strain CMC-4104 plasmid pLarge, complete sequence
Source refseq
Topology circular
Length 278489 bp
GC Content 0.47 %
Created at NCBI May 27, 2022



Assembly

Genome Data Information

Accession GCF_023547145.1
Assembly Coverage 70


Biosample

Curated Collection Information
Accession 27484493

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.271N;79.9414W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.27/-79.94
Address Lucky, 18, Kirk Avenue Southwest, Roanoke, Virginia, 24011, United States

ECOSYSTEM
Original Query Homo sapiens,Splenic fine needle aspirate
Classification host_associated,liver,spleen
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 45
Host-associated Sex male

DISEASE
Original Query Intra-abdominal infection (splenic abscess),Death,Organism isolated early in course from a fine needle aspiration prior to decompensation (eventually required pressor support and ventilation), eventually became bacteremic with index organism with seeding to the other organ systems such as the lungs (were then identified in pulmonary isolate),Significant comorbidities; alcoholic necrotizing pancreatitis (likely linked to disease state)
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Acute necrotizing pancreatitis (DOID:0080998 )
    • An acute pancreatitis that is characterized by one or more areas of necrosis in the pancreas with varying degree of involvement of the surrounding tissues or organ systems.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP095444.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore