Plasmid NZ_CP095279.1

Sequence

Nucleotide Information

Accession NZ_CP095279.1
Description Enterobacter hormaechei subsp. xiangfangensis strain HD8642 plasmid pHD8642-NDM, complete sequence
Source refseq
Topology circular
Length 64939 bp
GC Content 0.49 %
Created at NCBI Nov. 11, 2022



Assembly

Genome Data Information

Accession GCF_026109755.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 27409789

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.67N;104.05E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.67/104.05
Address 成都市妇女儿童中心医院实业街院区, 32, 实业街, Kuanxiangzi, Shaocheng, Qingyang District, Chengdu, High-Tech Zone (West), Sichuan, 610000, China

ECOSYSTEM
Original Query Homo sapiens,respiratory tract
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 102

DISEASE
Original Query Unkonwn
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP095279.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore