Plasmid NZ_CP093924.1

Sequence

Nucleotide Information

Accession NZ_CP093924.1
Description Escherichia coli strain ST167 plasmid pGA_Eco4, complete sequence
Source refseq
Topology circular
Length 8335 bp
GC Content 0.50 %
Created at NCBI March 30, 2022



Assembly

Genome Data Information

Accession GCF_022699465.1
Assembly Coverage 76


Biosample

Curated Collection Information
Accession 26656496

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 45.30989N;9.50085E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.31/9.50
Address 4f, Via Nino Dall’Oro, Serravalle, Revellino, Lodi, Lombardy, 26900, Italy

ECOSYSTEM
Original Query Felis catus,liver
Classification host_associated,liver
Host-associated Taxon
  • Felis catus (9685)

DISEASE
Original Query Parvovirus hemorrhagic enteritis
DOID/SYMP
  • Intestinal disease (DOID:5295 )
    • A gastrointestinal system disease that is located_in the intestine.
  • Enteritis (SYMP:0000039 )
    • Enteritis is a digestive system symptom involving the inflammation of the small intestines and especially of the human ileum.
  • Viral infectious disease (DOID:934 )
    • A disease by infectious agent that results in infection, has_material_basis_in Viruses.
    • Has_material_basis_in: ['viruses']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP093924.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2