Plasmid NZ_CP093231.1

Sequence

Nucleotide Information

Accession NZ_CP093231.1
Description Escherichia coli strain EC-16-35 plasmid pEC-16-35-6, complete sequence
Source refseq
Topology circular
Length 4693 bp
GC Content 0.42 %
Created at NCBI March 17, 2022



Assembly

Genome Data Information

Accession GCF_022591475.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 26549900

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.76N;113.65E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.76/113.65
Address 煤场北街, Minggonglu, Erqi District, Zhengzhou, 金水区, Henan, 450002, China

ECOSYSTEM
Original Query Homo sapiens,ascites
Classification disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Ascites to be examined
DOID/SYMP
  • Ascites (SYMP:0000526 )
    • An abdominal symptom consisting of an abnormal accumulation of serous fluid in the spaces between tissues and organs in the cavity of the abdomen.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore