Plasmid NZ_CP092756.1

Sequence

Nucleotide Information

Accession NZ_CP092756.1
Description Klebsiella pneumoniae strain bat17 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 107781 bp
GC Content 0.49 %
Created at NCBI March 8, 2022



Assembly

Genome Data Information

Accession GCF_022492855.1
Assembly Coverage 20


Biosample

Curated Collection Information

Accession 26209581

PLASMID INFORMATION
Genotype ST512

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens,Rectal Swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
  • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization





Identical Plasmids

100% Sequence Identity


  • Sequence

    • Accession: NZ_CP092762.1
    • Description: Klebsiella pneumoniae strain bat16 plasmid unnamed3, complete sequence
    • Source: refseq
    • Created at NCBI: March 8, 2022

  • Biosample

    Accession: 26209580
  • GEOGRAPHICAL INFORMATION
    • Original Query: None
    • Original Query Type: None
    • Address: None
    • Coordinates (Lat/Lon):
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Klebsiella pneumoniae infection
    • DOID/SYMP:
      • Klebsiella pneumonia (DOID:13272 )
      • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.
  • Visualization


  • Sequence

    • Accession: NZ_CP092768.1
    • Description: Klebsiella pneumoniae strain bat15 plasmid unnamed3, complete sequence
    • Source: refseq
    • Created at NCBI: March 8, 2022

  • Biosample

    Accession: 26209579
  • GEOGRAPHICAL INFORMATION
    • Original Query: None
    • Original Query Type: None
    • Address: None
    • Coordinates (Lat/Lon):
  • ECOSYSTEM
    • Original Query: Homo sapiens,Rectal Swab
    • Classification: gastrointestinal_system,host_associated,rectal
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Klebsiella pneumoniae infection
    • DOID/SYMP:
      • Klebsiella pneumonia (DOID:13272 )
      • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.
  • Visualization


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore