Plasmid NZ_CP092593.1

Sequence

Nucleotide Information

Accession NZ_CP092593.1
Description Klebsiella pneumoniae strain EFN 299 plasmid p4, complete sequence
Source refseq
Topology circular
Length 65919 bp
GC Content 0.53 %
Created at NCBI June 29, 2022



Assembly

Genome Data Information

Accession GCF_023920325.1
Assembly Coverage 42.7


Biosample

Curated Collection Information
Accession 26139404

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 4.9239N;1.7446W
Original Query Type coordinates
Coordinates (Lat/Lon) 4.92/-1.74
Address Effia Nkwanta Regional Hospital, STMA Road, Assakae, Sekondi-Takoradi, Sekondi Takoradi Metropolitan District, Western Region, WS-189-9360, Ghana

ECOSYSTEM
Original Query Homo sapiens,sputum culture
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Respiratory disease
DOID/SYMP
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP092593.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore