Plasmid NZ_CP092464.1

Sequence

Nucleotide Information

Accession NZ_CP092464.1
Description Citrobacter freundii strain Cf7308 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 319832 bp
GC Content 0.49 %
Created at NCBI May 18, 2022



Assembly

Genome Data Information

Accession GCF_023374915.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 24404972

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Beijing
Original Query Type name
Coordinates (Lat/Lon) 39.91/116.39
Address China,Beijing

ECOSYSTEM
Original Query Homo sapiens,bacterium,postoperative intraabdominal drainage liquid
Classification abdominal,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query intestinal fistula
DOID/SYMP
  • Gastrointestinal system disease (DOID:77 )
    • A disease of anatomical entity that is located_in the gastrointestinal tract.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP092464.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussilCcopy
amrfinderpluspcoCcopy
amrfinderplussilScopy
rgiBrucella suis mprFcopy
amrfinderpluspcoScopy
amrfinderplusmerTcopy
amrfinderplusmerEcopy
amrfinderpluspcoAcopy
amrfinderplusarsAcopy
amrfinderpluspcoRcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 365 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP011133_00108MOBH191944194643plus93.22210001730
replicon001726__CP019987_00074Col(VCM04)316893318011minus1008702067
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2