Plasmid NZ_CP092275.1
Sequence
Nucleotide Information
| Accession | NZ_CP092275.1 |
|---|---|
| Description | Klebsiella pneumoniae strain FJ8-TC plasmid p3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 32126 bp |
| GC Content | 0.48 % |
| Created at NCBI | July 29, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 25889008 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Zhejiang |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 29.00/120.00 |
| Address | China,Zhejiang |
ECOSYSTEM
| Original Query | Homo sapiens,whole organism |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | DUF2913 family protein | copy | ||
| PGAG | umuD | copy | ||
| PGAG | Y-family DNA polymerase | copy | ||
| PGAG | PAS domain-containing methyl-accepting chemotaxis protein | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | S24 family peptidase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ISL3-like element ISKox3 family transposase | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | division plane positioning ATPase MipZ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 42 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP017721_00179 | rep_cluster_2183 | 31 | 857 | plus | 82.169 | 96 | 0 | 708 |
| replicon | 000221__NC_025130_00012 | IncX3 | 16241 | 17113 | plus | 100 | 100 | 0 | 1613 |
| replicon | 000128__CP023916 | IncFII | 31889 | 32122 | minus | 100 | 100 | 5.72e-119 | 433 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |