Plasmid NZ_CP091633.1
Sequence
Nucleotide Information
| Accession | NZ_CP091633.1 |
|---|---|
| Description | Salmonella enterica strain 1147 plasmid p1147-4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4267 bp |
| GC Content | 0.45 % |
| Created at NCBI | Dec. 17, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (28901) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 25270673 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Hangzhou |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.25/120.21 |
| Address | China,Hangzhou |
ECOSYSTEM
| Original Query | Homo sapiens,feces |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | enteritis |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP091610.1
- Description: Salmonella enterica strain 1810 plasmid p1810-3, complete sequence
- Source: refseq
- Created at NCBI: Dec. 17, 2022
-
Host Taxonomy
Assigned Host: Salmonella enterica (28901)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain:
-
Biosample
Accession: 25270680 - GEOGRAPHICAL INFORMATION
- Original Query: China,Hangzhou
- Original Query Type: name
- Address: China,Hangzhou
- Coordinates (Lat/Lon): 30.25/120.21
- ECOSYSTEM
- Original Query: Homo sapiens,feces
- Classification: fecal,gastrointestinal_system,host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: enteritis
- DOID/SYMP:
- Intestinal disease (DOID:5295 ) A gastrointestinal system disease that is located_in the intestine.
- Enteritis (SYMP:0000039 ) Enteritis is a digestive system symptom involving the inflammation of the small intestines and especially of the human ileum.
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | DNA cytosine methyltransferase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 7 of 7 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 2499 | 3016 | plus | 90.192 | 99 | 0 | 671 |
| oriT | CP016722 | MOB_unknown | 2336 | 2553 | minus | 91.781 | 100 | 4.32e-80 | 303 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |