Plasmid NZ_CP091575.1

Sequence

Nucleotide Information

Accession NZ_CP091575.1
Description Salmonella enterica strain 2 plasmid p2-mcr, complete sequence
Source refseq
Topology circular
Length 65271 bp
GC Content 0.43 %
Created at NCBI May 12, 2022



Assembly

Genome Data Information

Accession GCF_023330905.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 16419716

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query enteritis
DOID/SYMP
  • Intestinal disease (DOID:5295 )
    • A gastrointestinal system disease that is located_in the intestine.
  • Enteritis (SYMP:0000039 )
    • Enteritis is a digestive system symptom involving the inflammation of the small intestines and especially of the human ileum.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP091575.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmcr-1.1copy
PGAGrepAcopy
PGAGtransposasecopy
PGAGHok/Gef family proteincopy
PGAGProQ/FINO family proteincopy
PGAGhypothetical proteincopy
PGAGdivision plane positioning ATPase MipZcopy
PGAGhypothetical proteincopy
PGAGJ domain-containing proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 80 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseMN232180_00018MOBP1463918949plus98.08910002785
mate-pair-formationNC_020270_00058MPF_T4411146066minus97.40110001199
mate-pair-formationNC_019039_00051MPF_T4828849055minus1001009.86e-173534
mate-pair-formationNC_019039_00052MPF_T4905549786minus99.591004.55e-147460
mate-pair-formationNC_020270_00063MPF_T4995552309minus99.36310001560
mate-pair-formationNC_019039_00065MPF_T5938960381minus87.0091002.58e-156491
replicon000147__CP006264_00003IncI211029plus99.80610001890
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2