Plasmid NZ_CP091475.1
Sequence
Nucleotide Information
| Accession | NZ_CP091475.1 |
|---|---|
| Description | Klebsiella michiganensis strain KO_408 plasmid pKO_5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 9564 bp |
| GC Content | 0.45 % |
| Created at NCBI | Feb. 11, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella michiganensis (1134687) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_michiganensis (1134687) |
| Strain |
Biosample
Curated Collection Information
| Accession | 25236446 |
|---|
PLASMID INFORMATION
| Genotype | ST-265 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | 35.7017N;139.7643E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 35.70/139.76 |
| Address | Tokyo Medical and Dental University, Sotobori-dori Avenue, Yushima 1-chome, Bunkyō, Tokyo, 113-8431, Japan |
ECOSYSTEM
| Original Query | Homo sapiens,respiratory culture |
|---|---|
| Classification | cell_culture,host_associated,respiratory_system |
| Host-associated Taxon |
|
| Host-associated Age | 71 |
| Host-associated Sex | male |
DISEASE
| Original Query | Pnuemonia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP077432.1
- Description: Klebsiella aerogenes strain NTT31XS plasmid pNTT31XS-9k, complete sequence
- Source: refseq
- Created at NCBI: June 29, 2021
-
Host Taxonomy
Assigned Host: Klebsiella aerogenes (548)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_aerogenes (548)
- Strain:
-
Biosample
Accession: 19778273 - GEOGRAPHICAL INFORMATION
- Original Query: China,Yangzhou
- Original Query Type: name
- Address: China,Yangzhou
- Coordinates (Lat/Lon): 32.39/119.44
- ECOSYSTEM
- Original Query: porcine,intestinal contents,intestinal contents
- Classification: gastrointestinal_system,host_associated
- Host-associated Taxon:
- Sus scrofa (9823)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | replication initiation protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | type ISP restriction/modification enzyme | copy | ||
| PGAG | mobilization protein MobX | copy | ||
| PGAG | mobA | copy | ||
| PGAG | traD | copy | ||
| MOB-typer | ColE10 | copy | ||
| MOB-typer | MOBQ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 8 of 8 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_002056_00006 | MOBQ | 7228 | 8340 | minus | 94.07 | 100 | 0 | 643 |
| replicon | X01654 | ColE10 | 775 | 951 | plus | 100 | 100 | 2.01e-87 | 327 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |