Plasmid NZ_CP091002.1

Sequence

Nucleotide Information

Accession	NZ_CP091002.1
Description	Staphylococcus epidermidis strain BC1191 plasmid pSEBC1191-4, complete sequence
Source	refseq
Topology	circular
Length	8577 bp
GC Content	0.31 %
Created at NCBI	Jan. 20, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus epidermidis (1282)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_epidermidis (1282)
Strain

Assembly

Genome Data Information

Accession	GCF_021513095.1
Assembly Coverage	1809

Biosample

Curated Collection Information

Accession	18740298

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	France
Original Query Type	name
Coordinates (Lat/Lon)	46.60/1.89
Address	France

ECOSYSTEM

Original Query	Homo sapiens,skin swab
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP091002.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

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Greens

100

Hex

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G

B

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	type I toxin-antitoxin system Fst family toxin		copy
PGAG	ABC transporter ATP-binding protein		copy
PGAG	DUF1430 domain-containing protein		copy
PGAG	lactococcin 972 family bacteriocin		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	mobV		copy
PGAG	RepB family plasmid replication initiator protein		copy
PGAG	helix-turn-helix domain-containing protein		copy
Antismash	RiPP-like		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 12 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

AB000510.1					non-mobilizable	AD045	AM462	Candidatus Phytoplasma	0.0
AB011548.2	rep_cluster_2350	MOBF		MOB_unknown	mobilizable	AA667	AI941	Actinomycetota,Bacillota,Bacteroidota,Pseudomonadota	0.0	genus
AB011549.2	IncFIA,IncFIB				non-mobilizable	AA345	AI296	Enterobacterales	0.0	order
AB063523.1	rep_cluster_1526				non-mobilizable	AE201	AN929	Wigglesworthia	0.0
AB244976.1	rep_cluster_1617	MOBP	MPF_T	MOBQ	conjugative	AC441	AL633	Sphingomonadaceae	0.00940624
AB576781.2	IncFII	MOBF	MPF_F		conjugative	AB460	AK247	Enterobacterales	0.0	family
AB605179.1	IncFIB,IncFII	MOBF	MPF_F		conjugative	AB460	AK247	Enterobacterales	0.0	order
ADWM02000138.1					non-mobilizable	AF844	AP846	Neisseria	0.00058191
ADWN02000004.1					non-mobilizable	AF844	AP846	Neisseria	0.00058191
AE006471.2	IncFIB,IncFII	MOBF	MPF_F		conjugative	AB460	AK247	Enterobacterales	0.0	order
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Showing 1 to 10 of 72,360 entries (filtered from 72,556 total entries)

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BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000784__NC_007171_00001	rep_cluster_1442	6918	7678	plus	87.533	88	0	880
relaxase	CP034114_00004	MOBV	4964	6241	plus	97.887	100	0	866
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2