Plasmid NZ_CP090450.1

Sequence

Nucleotide Information

Accession NZ_CP090450.1
Description Escherichia coli strain PT62 plasmid pPT62-106kb, complete sequence
Source refseq
Topology circular
Length 106761 bp
GC Content 0.51 %
Created at NCBI Jan. 15, 2022



Assembly

Genome Data Information

Accession GCF_021441965.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 24648241

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.91N;120.26E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.91/120.26
Address 西大街, 澄江街道, Jiangyin City, Wuxi City, Jiangsu, 214400, China

ECOSYSTEM
Original Query pigeon
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP090450.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgisul3copy
amrfinderplusmef(B)copy
amrfinderplusaph(3')-Iacopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGtyrosine-type recombinase/integrasecopy
PGAGaminoglycoside O-phosphotransferase APH(3')-Iacopy
PGAGGrpB family proteincopy
PGAGpemKcopy
PGAGpemIcopy
PGAGCPBP family intramembrane glutamic endopeptidasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 125 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formation08-5333_00200MPF_Unknown2400326189minus98.23810001462
mate-pair-formationNC_009837_00049MPF_F2774730701minus94.1249901851
mate-pair-formationNC_009837_00049MPF_F3070131915minus98.519990781
mate-pair-formationNC_010488_00021MPF_F3416235967minus99.66810001185
mate-pair-formationNC_018966_00040MPF_F3596736557minus98.477935.21e-127401
mate-pair-formationNC_017639_00100MPF_F3664737603minus98.1191000622
mate-pair-formationNC_007675_00027MPF_F3760338232minus98.571972.8999999999999996e-135425
mate-pair-formationNC_013437_00116MPF_T3861841239minus90.8479901644
mate-pair-formationNC_017639_00094MPF_F4175842270minus98.831004.29e-100322
mate-pair-formationNC_019094_00090MPF_F4318444578minus96.137960814
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2