Plasmid NZ_CP090193.1

Sequence

Nucleotide Information

Accession NZ_CP090193.1
Description Enterobacter hormaechei strain TUECL19003 plasmid pTUECL19003-1, complete sequence
Source refseq
Topology circular
Length 114684 bp
GC Content 0.52 %
Created at NCBI Jan. 11, 2022



Assembly

Genome Data Information

Accession GCF_021398115.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 24425646

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 24.24N;120.54E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.24/120.54
Address 550號, 中央路一段, Da Village, Wuqi District, Dazhuang, Taichung, 43545, Taiwan

ECOSYSTEM
Original Query Homo sapiens,pus
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 67
Host-associated Sex male

DISEASE
Original Query Surgical Wound Infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP019819.1 See Comparison
OW967486.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW967015.1 See Comparison
OW849459.1 See Comparison
OW849200.1 See Comparison
OW849307.1 See Comparison
CP021897.1 See Comparison
OW849102.1 See Comparison
NZ_CP090147.1 See Comparison
OW967486.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_CP119679.1 See Comparison
NZ_AP019819.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_CP137200.1 See Comparison
OW849200.1 See Comparison
OW967015.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW849307.1 See Comparison
NZ_AP019819.1 See Comparison
OW849102.1 See Comparison
OW849459.1 See Comparison
NZ_CP090147.1 See Comparison
CP021897.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_CP119679.1 See Comparison
OW967486.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW849307.1 See Comparison
OW967015.1 See Comparison
OW849459.1 See Comparison
OW849102.1 See Comparison
OW849200.1 See Comparison
CP021897.1 See Comparison
NZ_CP090147.1 See Comparison
NZ_CP119679.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_AP019819.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW849307.1 See Comparison
OW967486.1 See Comparison
OW967015.1 See Comparison
OW849459.1 See Comparison
OW849102.1 See Comparison
OW849200.1 See Comparison
NZ_CP090147.1 See Comparison
CP021897.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP019819.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_CP119679.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW967486.1 See Comparison
NZ_CP090193.1 See Comparison
OW849459.1 See Comparison
OW849307.1 See Comparison
OW967015.1 See Comparison
OW849200.1 See Comparison
OW849102.1 See Comparison
NZ_CP090147.1 See Comparison
CP021897.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_AP019819.1 See Comparison
NZ_CP119679.1 See Comparison
NZ_AP025823.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW849307.1 See Comparison
OW967015.1 See Comparison
OW849200.1 See Comparison
OW967486.1 See Comparison
OW849459.1 See Comparison
OW849102.1 See Comparison
NZ_CP090147.1 See Comparison
CP021897.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_CP126865.1 See Comparison
NZ_AP019819.1 See Comparison
NZ_CP119679.1 See Comparison
NZ_AP025835.1 See Comparison
NZ_AP025838.1 See Comparison
NZ_AP025832.1 See Comparison
NZ_AP025825.1 See Comparison
NZ_AP025771.1 See Comparison
OW967486.1 See Comparison
NZ_AP025806.1 See Comparison
NZ_AP025794.1 See Comparison
NZ_AP025841.1 See Comparison
NZ_AP025829.1 See Comparison
NZ_AP025779.1 See Comparison
NZ_AP025823.1 See Comparison
OW849307.1 See Comparison
OW849459.1 See Comparison
OW967015.1 See Comparison
OW849102.1 See Comparison
NZ_CP090147.1 See Comparison
OW849200.1 See Comparison
NZ_CP126865.1 See Comparison
CP021897.1 See Comparison
NZ_CP137200.1 See Comparison
NZ_CP119679.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2