Plasmid NZ_CP087614.1

Sequence

Nucleotide Information

Accession NZ_CP087614.1
Description Klebsiella pneumoniae subsp. pneumoniae strain DD02172 plasmid pDD02172-3, complete sequence
Source refseq
Topology circular
Length 81442 bp
GC Content 0.48 %
Created at NCBI April 23, 2022



Assembly

Genome Data Information

Accession GCF_023066625.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 22822728

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.87N;116.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 39.87/116.28
Address 望园路, Liuliqiao, 小井村, Fengtai District, Beijing, 100071, China

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP109987.1
    • Description: Klebsiella pneumoniae strain KP424 plasmid pKP424-5, complete sequence
    • Source: refseq
    • Created at NCBI: Nov. 3, 2022

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 31413558
  • GEOGRAPHICAL INFORMATION
    • Original Query: China,Hangzhou
    • Original Query Type: name
    • Address: China,Hangzhou
    • Coordinates (Lat/Lon): 30.25/120.21
  • ECOSYSTEM
    • Original Query: Homo sapiens,stool
    • Classification: fecal,gastrointestinal_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2