Plasmid NZ_CP086482.1

Sequence

Nucleotide Information

Accession NZ_CP086482.1
Description Escherichia coli strain Ec-050-T20-MAC plasmid pEc-050-T20-MAC_2, complete sequence
Source refseq
Topology circular
Length 99476 bp
GC Content 0.53 %
Created at NCBI March 31, 2022



Assembly

Genome Data Information

Accession GCF_022759765.1
Assembly Coverage 308


Biosample

Curated Collection Information
Accession 22108724

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland
Original Query Type name
Coordinates (Lat/Lon) 46.80/8.23
Address Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP086472.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_CP086482.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_LR880735.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_CP086472.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP086492.1 See Comparison
NZ_CP086502.1 See Comparison
NZ_CP086512.1 See Comparison
NZ_CP093920.1 See Comparison
NZ_CP043948.1 See Comparison
NZ_CP043944.1 See Comparison
NZ_CP043230.1 See Comparison
NZ_MN007143.1 See Comparison
NZ_CP029978.1 See Comparison
NZ_MG649062.1 See Comparison
NZ_LR880735.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaadA2copy
amrfinderplusaac(3)-IIecopy
amrfinderplusblecopy
amrfinderplusdfrA12copy
amrfinderplusiucBcopy
amrfinderplusiucCcopy
amrfinderplusiucAcopy
amrfinderplusiucDcopy
rgiaadA2copy
rgimphAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 109 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000095__NZ_CP014273_00094IncFIB1978plus98.56910001729
replicon000136__AP014877_00014IncFIA4447945336minus94.76110001336
repliconAP001918IncFIC4533445606plus95.2381001.3100000000000001e-118433
replicon000136__AP014877_00014IncFIA5785658304minus95.5461000719
repliconAP001918IncFIC5830258802plus84.0641004.61e-133481
repliconAF250878IncFIA7411674499minus88.083997.670000000000001e-125453
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 6 of 6 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2