Plasmid NZ_CP086450.1
Sequence
Nucleotide Information
| Accession | NZ_CP086450.1 |
|---|---|
| Description | Klebsiella pneumoniae strain AE-2247421-T0 plasmid p2247421-T0_3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 71289 bp |
| GC Content | 0.52 % |
| Created at NCBI | March 31, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22108731 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens,stool |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | merT | copy | ||
| amrfinderplus | merC | copy | ||
| amrfinderplus | merE | copy | ||
| amrfinderplus | blaCTX-M-15 | copy | ||
| amrfinderplus | dfrA14 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| PGAG | RepB family plasmid replication initiator protein | copy | ||
| PGAG | ParA family plasmid-partitioning AAA ATPase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 74 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000759__NC_013950_00034 | rep_cluster_1418 | 19 | 894 | plus | 100 | 100 | 0 | 1618 |
| replicon | 000204__CP008701_00115 | IncR | 25042 | 25937 | plus | 99.442 | 100 | 0 | 1626 |
| replicon | AF250878 | IncFIA | 50483 | 50869 | plus | 98.45 | 99 | 0 | 682 |
| oriT | NZ_CP016035 | MOBF | 48541 | 48799 | minus | 81.439 | 96 | 1.58e-50 | 206 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |